HL_8FR8_017

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CGGGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FR8_017 not in the Motif Atlas

Homologous match to HL_4WF9_016

Geometric discrepancy: 0.0988

The information below is about HL_4WF9_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

8FR8|1|A|C|575
8FR8|1|A|G|576
8FR8|1|A|G|577
8FR8|1|A|G|578
8FR8|1|A|A|579
8FR8|1|A|G|580

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain 8

50S ribosomal protein L32

Chain Y

50S ribosomal protein L22