HL_8FR8_022

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UGAAUAG

Length

7 nucleotides

Bulged bases

8FR8|1|A|U|739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FR8_022 not in the Motif Atlas

Homologous match to HL_7RQB_021

Geometric discrepancy: 0.1188

The information below is about HL_7RQB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

8FR8|1|A|U|735
8FR8|1|A|G|736
8FR8|1|A|A|737
8FR8|1|A|A|738
8FR8|1|A|U|739
8FR8|1|A|A|740
8FR8|1|A|G|741

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain V

50S ribosomal protein L15

Chain c

50S ribosomal protein L33 2

Chain x

50S ribosomal protein L35