HL_8FR8_030

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GAAACAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FR8_030 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.0941

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8FR8|1|A|G|1096
8FR8|1|A|A|1097
8FR8|1|A|A|1098
8FR8|1|A|A|1099
8FR8|1|A|C|1100
8FR8|1|A|A|1101
8FR8|1|A|G|1102
8FR8|1|A|C|1103

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain 3

50S ribosomal protein eL31

Chain 7

50S ribosomal protein L30

Chain W

50S ribosomal protein L20