HL_8FR8_040
3D structure
- PDB id
- 8FR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- UCAGUGGUAAUA
- Length
- 12 nucleotides
- Bulged bases
- 8FR8|1|A|G|1674, 8FR8|1|A|U|1675
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FR8_040 not in the Motif Atlas
- Homologous match to HL_7A0S_036
- Geometric discrepancy: 0.5489
- The information below is about HL_7A0S_036
- Detailed Annotation
- Pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- HL_00824.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8FR8|1|A|U|1671
8FR8|1|A|C|1672
8FR8|1|A|A|1673
8FR8|1|A|G|1674
8FR8|1|A|U|1675
8FR8|1|A|G|1676
8FR8|1|A|G|1677
8FR8|1|A|U|1678
8FR8|1|A|A|1679
8FR8|1|A|A|1680
8FR8|1|A|U|1681
8FR8|1|A|A|1682
Current chains
- Chain A
- 23S rRNA (3119-MER)
Nearby chains
- Chain J
- 50S ribosomal protein L17
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