HL_8FR8_055

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

8FR8|1|A|C|2368

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FR8_055 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2582

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.4

Basepair signature

cWW-F

Number of instances in this motif group

48

Unit IDs

8FR8|1|A|C|2366
8FR8|1|A|G|2367
8FR8|1|A|C|2368
8FR8|1|A|C|2369
8FR8|1|A|A|2370
8FR8|1|A|G|2371

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain m

30S ribosomal protein S11