HL_8FR8_072

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GCAGACCAC

Length

9 nucleotides

Bulged bases

8FR8|1|A|C|3041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FR8_072 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.0987

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8FR8|1|A|G|3040
8FR8|1|A|C|3041
8FR8|1|A|A|3042
8FR8|1|A|G|3043
8FR8|1|A|A|3044
8FR8|1|A|C|3045
8FR8|1|A|C|3046
8FR8|1|A|A|3047
8FR8|1|A|C|3048

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain 8

50S ribosomal protein L32

Chain J

50S ribosomal protein L17

Chain L

50S ribosomal protein L3