HL_8FR8_076

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CAGCUCGGUAG

Length

11 nucleotides

Bulged bases

8FR8|1|E|C|516, 8FR8|1|E|U|518, 8FR8|1|E|C|518|||A, 8FR8|1|E|G|518|||B, 8FR8|1|E|G|519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FR8_076 not in the Motif Atlas

Homologous match to HL_4LCK_001

Geometric discrepancy: 0.4344

The information below is about HL_4LCK_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FR8|1|E|C|513
8FR8|1|E|A|514
8FR8|1|E|G|515
8FR8|1|E|C|516
8FR8|1|E|U|518
8FR8|1|E|C|518|||A
8FR8|1|E|G|518|||B
8FR8|1|E|G|519
8FR8|1|E|U|520
8FR8|1|E|A|521
8FR8|1|E|G|522

Current chains

Chain E

fMet tRNA (77-MER)

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain O

50S ribosomal protein L5