HL_8FR8_078
3D structure
- PDB id
- 8FR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- GGUUCGAAUC
- Length
- 10 nucleotides
- Bulged bases
- 8FR8|1|E|U|554
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FR8_078 not in the Motif Atlas
- Homologous match to HL_5E6M_003
- Geometric discrepancy: 0.5029
- The information below is about HL_5E6M_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.4
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 137
Unit IDs
8FR8|1|E|G|552
8FR8|1|E|G|553
8FR8|1|E|U|554
8FR8|1|E|U|555
8FR8|1|E|C|556
8FR8|1|E|G|557
8FR8|1|E|A|558
8FR8|1|E|A|559
8FR8|1|E|U|560
8FR8|1|E|C|561
Current chains
- Chain E
- fMet tRNA (77-MER)
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain N
- 50S ribosomal protein L16
- Chain O
- 50S ribosomal protein L5
Coloring options: