HL_8FR8_085

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FR8_085 not in the Motif Atlas

Homologous match to HL_4LFB_007

Geometric discrepancy: 0.0991

The information below is about HL_4LFB_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

8FR8|1|a|U|296
8FR8|1|a|G|297
8FR8|1|a|A|298
8FR8|1|a|G|299
8FR8|1|a|A|300
8FR8|1|a|G|301

Current chains

Chain a

16S rRNA (1511-MER)

Nearby chains

Chain e

30S ribosomal protein S4

Chain f

30S ribosomal protein S5

Chain r

30S ribosomal protein S17