HL_8FR8_087

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

8FR8|1|a|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FR8_087 not in the Motif Atlas

Homologous match to HL_6CZR_080

Geometric discrepancy: 0.1474

The information below is about HL_6CZR_080

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

58

Unit IDs

8FR8|1|a|C|342
8FR8|1|a|U|343
8FR8|1|a|A|344
8FR8|1|a|C|345
8FR8|1|a|G|346
8FR8|1|a|G|347

Current chains

Chain a

16S rRNA (1511-MER)

Nearby chains

Chain C

50S ribosomal protein L19

Chain U

50S ribosomal protein L14