HL_8FTO_043

3D structure

PDB id

8FTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with an improved MS2 tag inserted in H98

Experimental method

ELECTRON MICROSCOPY

Resolution

1.85 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8FTO|1|a|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FTO_043 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.0852

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8FTO|1|a|C|305
8FTO|1|a|U|306
8FTO|1|a|G|307
8FTO|1|a|G|308
8FTO|1|a|A|309
8FTO|1|a|A|310
8FTO|1|a|A|311
8FTO|1|a|G|312

Current chains

Chain a

23S rRNA

Nearby chains

Chain t

50S ribosomal protein L24