HL_8FTO_045

3D structure

PDB id

8FTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with an improved MS2 tag inserted in H98

Experimental method

ELECTRON MICROSCOPY

Resolution

1.85 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

8FTO|1|a|G|329, 8FTO|1|a|A|330, 8FTO|1|a|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FTO_045 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.0623

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

8FTO|1|a|G|327
8FTO|1|a|U|328
8FTO|1|a|G|329
8FTO|1|a|A|330
8FTO|1|a|C|331
8FTO|1|a|A|332
8FTO|1|a|G|333
8FTO|1|a|C|334
8FTO|1|a|C|335

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24