HL_8FTO_100

3D structure

PDB id

8FTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with an improved MS2 tag inserted in H98

Experimental method

ELECTRON MICROSCOPY

Resolution

1.85 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

8FTO|1|a|A|2853

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FTO_100 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0636

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8FTO|1|a|G|2852
8FTO|1|a|A|2853
8FTO|1|a|A|2854
8FTO|1|a|G|2855
8FTO|1|a|A|2856
8FTO|1|a|C|2857
8FTO|1|a|G|2858
8FTO|1|a|A|2859
8FTO|1|a|C|2860

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain m

50S ribosomal protein L17