HL_8FZD_026

3D structure

PDB id

8FZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

G(PSU)GCUAACGU

Length

10 nucleotides

Bulged bases

8FZD|1|A|U|958, 8FZD|1|A|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZD_026 not in the Motif Atlas

Homologous match to HL_5J7L_159

Geometric discrepancy: 0.14

The information below is about HL_5J7L_159

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FZD|1|A|G|954
8FZD|1|A|PSU|955
8FZD|1|A|G|956
8FZD|1|A|C|957
8FZD|1|A|U|958
8FZD|1|A|A|959
8FZD|1|A|A|960
8FZD|1|A|C|961
8FZD|1|A|G|962
8FZD|1|A|U|963

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain O

50S ribosomal protein L16