HL_8FZD_042

3D structure

PDB id

8FZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

8FZD|1|A|U|1729, 8FZD|1|A|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZD_042 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3197

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8FZD|1|A|C|1727
8FZD|1|A|C|1728
8FZD|1|A|U|1729
8FZD|1|A|C|1730
8FZD|1|A|G|1731
8FZD|1|A|C|1732
8FZD|1|A|G|1733

Current chains

Chain A

23S Ribosomal RNA

Nearby chains