3D structure

PDB id
8FZD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AGUUCAUAU
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8FZD_060 not in the Motif Atlas
Homologous match to HL_5J7L_193
Geometric discrepancy: 0.162
The information below is about HL_5J7L_193
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_32735.2
Basepair signature
cWW-tSH-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

8FZD|1|A|A|2471
8FZD|1|A|G|2472
8FZD|1|A|U|2473
8FZD|1|A|U|2474
8FZD|1|A|C|2475
8FZD|1|A|A|2476
8FZD|1|A|U|2477
8FZD|1|A|A|2478
8FZD|1|A|U|2479

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain 8
50S ribosomal protein L36
Chain G
50S ribosomal protein L6

Coloring options:


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