HL_8FZD_066

3D structure

PDB id

8FZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8FZD|1|A|G|2751, 8FZD|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZD_066 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1149

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8FZD|1|A|C|2745
8FZD|1|A|U|2746
8FZD|1|A|G|2747
8FZD|1|A|A|2748
8FZD|1|A|A|2749
8FZD|1|A|A|2750
8FZD|1|A|G|2751
8FZD|1|A|C|2752
8FZD|1|A|A|2753
8FZD|1|A|U|2754
8FZD|1|A|C|2755
8FZD|1|A|U|2756
8FZD|1|A|A|2757
8FZD|1|A|A|2758
8FZD|1|A|G|2759

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain G

50S ribosomal protein L6