HL_8FZD_083

3D structure

PDB id

8FZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8FZD|1|a|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZD_083 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2129

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8FZD|1|a|G|462
8FZD|1|a|U|463
8FZD|1|a|U|464
8FZD|1|a|A|465
8FZD|1|a|A|466
8FZD|1|a|U|467
8FZD|1|a|A|468
8FZD|1|a|C|469
8FZD|1|a|C|470

Current chains

Chain a

16S Ribosomal RNA

Nearby chains