3D structure

PDB id
8FZD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUUCGG
Length
6 nucleotides
Bulged bases
8FZD|1|a|U|1451
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8FZD_101 not in the Motif Atlas
Homologous match to HL_5J7L_030
Geometric discrepancy: 0.1847
The information below is about HL_5J7L_030
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.5
Basepair signature
cWW-tSW-F
Number of instances in this motif group
57

Unit IDs

8FZD|1|a|C|1449
8FZD|1|a|U|1450
8FZD|1|a|U|1451
8FZD|1|a|C|1452
8FZD|1|a|G|1453
8FZD|1|a|G|1454

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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