3D structure

PDB id
8FZD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
G(5MU)(PSU)CGAUUC
Length
9 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8FZD_105 not in the Motif Atlas
Homologous match to HL_5L4O_003
Geometric discrepancy: 0.1268
The information below is about HL_5L4O_003
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_43993.1
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

8FZD|1|x|G|53
8FZD|1|x|5MU|54
8FZD|1|x|PSU|55
8FZD|1|x|C|56
8FZD|1|x|G|57
8FZD|1|x|A|58
8FZD|1|x|U|59
8FZD|1|x|U|60
8FZD|1|x|C|61

Current chains

Chain x
P-site phenylalanyl-tRNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain F
50S ribosomal protein L5
Chain O
50S ribosomal protein L16

Coloring options:


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