HL_8FZD_108
3D structure
- PDB id
- 8FZD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- G(5MU)(PSU)CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- 8FZD|1|y|C|56, 8FZD|1|y|G|57
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FZD_108 not in the Motif Atlas
- Homologous match to HL_6GSL_210
- Geometric discrepancy: 0.3549
- The information below is about HL_6GSL_210
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
8FZD|1|y|G|53
8FZD|1|y|5MU|54
8FZD|1|y|PSU|55
8FZD|1|y|C|56
8FZD|1|y|G|57
8FZD|1|y|A|58
8FZD|1|y|U|59
8FZD|1|y|U|60
8FZD|1|y|C|61
Current chains
- Chain y
- P-site phenylalanyl-tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: