HL_8FZD_115
3D structure
- PDB id
- 8FZD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- A(PSU)UGAA(AMP)A(PSU)
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, AMP
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FZD_115 not in the Motif Atlas
- Homologous match to HL_5E7K_237
- Geometric discrepancy: 0.5012
- The information below is about HL_5E7K_237
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8FZD|1|y|A|31
8FZD|1|y|PSU|32
8FZD|1|y|U|33
8FZD|1|y|G|34
8FZD|1|y|A|35
8FZD|1|y|A|36
8FZD|1|y|AMP|37
8FZD|1|y|A|38
8FZD|1|y|PSU|39
Current chains
- Chain y
- P-site phenylalanyl-tRNA
Nearby chains
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain g
- 30S ribosomal protein S7
- Chain k
- 30S ribosomal protein S11
- Chain x
- Transfer RNA; tRNA
- Chain z
- F-UAA mRNA
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