3D structure

PDB id
8FZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UUUCGA
Length
6 nucleotides
Bulged bases
8FZF|1|A|U|139
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8FZF_004 not in the Motif Atlas
Geometric match to HL_6QN3_003
Geometric discrepancy: 0.1827
The information below is about HL_6QN3_003
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.5
Basepair signature
cWW-tSW-F
Number of instances in this motif group
57

Unit IDs

8FZF|1|A|U|137
8FZF|1|A|U|138
8FZF|1|A|U|139
8FZF|1|A|C|140
8FZF|1|A|G|141
8FZF|1|A|A|142

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain V
50S ribosomal protein L23

Coloring options:


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