3D structure

PDB id
8FZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
G(PSU)GCUAACGU
Length
10 nucleotides
Bulged bases
8FZF|1|A|U|958, 8FZF|1|A|C|961
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8FZF_026 not in the Motif Atlas
Homologous match to HL_5J7L_159
Geometric discrepancy: 0.1681
The information below is about HL_5J7L_159
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8FZF|1|A|G|954
8FZF|1|A|PSU|955
8FZF|1|A|G|956
8FZF|1|A|C|957
8FZF|1|A|U|958
8FZF|1|A|A|959
8FZF|1|A|A|960
8FZF|1|A|C|961
8FZF|1|A|G|962
8FZF|1|A|U|963

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain O
50S ribosomal protein L16

Coloring options:


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