3D structure

PDB id
8FZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GUUAAUC
Length
7 nucleotides
Bulged bases
8FZF|1|A|U|1325, 8FZF|1|A|U|1329
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8FZF_032 not in the Motif Atlas
Homologous match to HL_5J7L_166
Geometric discrepancy: 0.204
The information below is about HL_5J7L_166
Detailed Annotation
Pseudoknot geometry with 3' bulge
Broad Annotation
No text annotation
Motif group
HL_57176.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
14

Unit IDs

8FZF|1|A|G|1324
8FZF|1|A|U|1325
8FZF|1|A|U|1326
8FZF|1|A|A|1327
8FZF|1|A|A|1328
8FZF|1|A|U|1329
8FZF|1|A|C|1330

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain P
Large ribosomal subunit protein bL17
Chain U
50S ribosomal protein L22

Coloring options:


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