3D structure

PDB id
8FZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AGUUCAUAU
Length
9 nucleotides
Bulged bases
8FZF|1|A|U|2473
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8FZF_059 not in the Motif Atlas
Homologous match to HL_4WF9_056
Geometric discrepancy: 0.1952
The information below is about HL_4WF9_056
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_32735.2
Basepair signature
cWW-tSH-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

8FZF|1|A|A|2471
8FZF|1|A|G|2472
8FZF|1|A|U|2473
8FZF|1|A|U|2474
8FZF|1|A|C|2475
8FZF|1|A|A|2476
8FZF|1|A|U|2477
8FZF|1|A|A|2478
8FZF|1|A|U|2479

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain 8
50S ribosomal protein L36
Chain G
50S ribosomal protein L6

Coloring options:


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