HL_8FZF_079

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

8FZF|1|a|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZF_079 not in the Motif Atlas

Homologous match to HL_5J7L_009

Geometric discrepancy: 0.1769

The information below is about HL_5J7L_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8FZF|1|a|C|342
8FZF|1|a|U|343
8FZF|1|a|A|344
8FZF|1|a|C|345
8FZF|1|a|G|346
8FZF|1|a|G|347

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L14

Chain R

50S ribosomal protein L19

Chain v

Peptide chain release factor RF3