HL_8FZF_082

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8FZF|1|a|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZF_082 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2055

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8FZF|1|a|G|462
8FZF|1|a|U|463
8FZF|1|a|U|464
8FZF|1|a|A|465
8FZF|1|a|A|466
8FZF|1|a|U|467
8FZF|1|a|A|468
8FZF|1|a|C|469
8FZF|1|a|C|470

Current chains

Chain a

16S Ribosomal RNA

Nearby chains