3D structure

PDB id
8FZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UGAUAAA
Length
7 nucleotides
Bulged bases
8FZF|1|a|U|1168
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8FZF_095 not in the Motif Atlas
Homologous match to HL_4LFB_027
Geometric discrepancy: 0.3981
The information below is about HL_4LFB_027
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

8FZF|1|a|U|1165
8FZF|1|a|G|1166
8FZF|1|a|A|1167
8FZF|1|a|U|1168
8FZF|1|a|A|1169
8FZF|1|a|A|1170
8FZF|1|a|A|1171

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain b
30S ribosomal protein S2

Coloring options:


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