HL_8FZF_101
3D structure
- PDB id
- 8FZF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GA(PSU)UGAA(MIA)A(PSU)C
- Length
- 11 nucleotides
- Bulged bases
- 8FZF|1|x|A|38
- QA status
- Modified nucleotides: PSU, MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FZF_101 not in the Motif Atlas
- Homologous match to HL_5EL4_222
- Geometric discrepancy: 0.3297
- The information below is about HL_5EL4_222
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8FZF|1|x|G|30
8FZF|1|x|A|31
8FZF|1|x|PSU|32
8FZF|1|x|U|33
8FZF|1|x|G|34
8FZF|1|x|A|35
8FZF|1|x|A|36
8FZF|1|x|MIA|37
8FZF|1|x|A|38
8FZF|1|x|PSU|39
8FZF|1|x|C|40
Current chains
- Chain x
- p/E phenylalanyl-tRNA
Nearby chains
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain i
- Small ribosomal subunit protein uS9
- Chain z
- F-UAA mRNA
Coloring options: