3D structure

PDB id
8FZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CCUCGCG
Length
7 nucleotides
Bulged bases
8FZF|1|A|U|1729, 8FZF|1|A|C|1730, 8FZF|1|A|C|1732
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8FZF_105 not in the Motif Atlas
Homologous match to HL_5J7L_214
Geometric discrepancy: 0.4061
The information below is about HL_5J7L_214
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_08100.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
4

Unit IDs

8FZF|1|A|C|1727
8FZF|1|A|C|1728
8FZF|1|A|U|1729
8FZF|1|A|C|1730
8FZF|1|A|G|1731
8FZF|1|A|C|1732
8FZF|1|A|G|1733

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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