HL_8FZG_067

3D structure

PDB id

8FZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

8FZG|1|A|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZG_067 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0993

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8FZG|1|A|G|2819
8FZG|1|A|A|2820
8FZG|1|A|A|2821
8FZG|1|A|G|2822
8FZG|1|A|A|2823
8FZG|1|A|C|2824
8FZG|1|A|G|2825
8FZG|1|A|A|2826
8FZG|1|A|C|2827

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain P

50S ribosomal protein L17