3D structure

PDB id
8FZG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAUCAGAAUGC
Length
11 nucleotides
Bulged bases
8FZG|1|a|U|1364
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8FZG_098 not in the Motif Atlas
Homologous match to HL_4LFB_030
Geometric discrepancy: 0.1237
The information below is about HL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06226.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8FZG|1|a|G|1356
8FZG|1|a|A|1357
8FZG|1|a|U|1358
8FZG|1|a|C|1359
8FZG|1|a|A|1360
8FZG|1|a|G|1361
8FZG|1|a|A|1362
8FZG|1|a|A|1363
8FZG|1|a|U|1364
8FZG|1|a|G|1365
8FZG|1|a|C|1366

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain i
30S ribosomal protein S9
Chain j
30S ribosomal protein S10
Chain n
30S ribosomal protein S14

Coloring options:


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