HL_8FZG_104
3D structure
- PDB id
- 8FZG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAGGGUAG
- Length
- 8 nucleotides
- Bulged bases
- 8FZG|1|y|G|18, 8FZG|1|y|G|19, 8FZG|1|y|U|20
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8FZG_104 not in the Motif Atlas
- Homologous match to HL_6JXM_001
- Geometric discrepancy: 0.2936
- The information below is about HL_6JXM_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
8FZG|1|y|C|13
8FZG|1|y|A|14
8FZG|1|y|G|15
8FZG|1|y|G|18
8FZG|1|y|G|19
8FZG|1|y|U|20
8FZG|1|y|A|21
8FZG|1|y|G|22
Current chains
- Chain y
- P-site phenylalanyl-tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: