HL_8FZI_078

3D structure

PDB id

8FZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZI_078 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1111

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8FZI|1|a|A|320
8FZI|1|a|A|321
8FZI|1|a|C|322
8FZI|1|a|U|323
8FZI|1|a|G|324
8FZI|1|a|A|325
8FZI|1|a|G|326
8FZI|1|a|A|327
8FZI|1|a|C|328
8FZI|1|a|A|329
8FZI|1|a|C|330
8FZI|1|a|G|331
8FZI|1|a|G|332
8FZI|1|a|U|333

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20