HL_8FZI_101

3D structure

PDB id

8FZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGGGUAG

Length

8 nucleotides

Bulged bases

8FZI|1|x|G|18, 8FZI|1|x|G|19, 8FZI|1|x|A|21

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZI_101 not in the Motif Atlas

Homologous match to HL_6GSK_217

Geometric discrepancy: 0.5929

The information below is about HL_6GSK_217

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FZI|1|x|C|13
8FZI|1|x|A|14
8FZI|1|x|G|15
8FZI|1|x|G|18
8FZI|1|x|G|19
8FZI|1|x|U|20
8FZI|1|x|A|21
8FZI|1|x|G|22

Current chains

Chain x

p/E phenylalanyl-tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA