HL_8FZI_103

3D structure

PDB id

8FZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

G(5MU)(PSU)CGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZI_103 not in the Motif Atlas

Homologous match to HL_1SER_002

Geometric discrepancy: 0.2906

The information below is about HL_1SER_002

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.6

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

8FZI|1|x|G|53
8FZI|1|x|5MU|54
8FZI|1|x|PSU|55
8FZI|1|x|C|56
8FZI|1|x|G|57
8FZI|1|x|A|58
8FZI|1|x|U|59
8FZI|1|x|U|60
8FZI|1|x|C|61

Current chains

Chain x

p/E phenylalanyl-tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA