HL_8FZJ_082

3D structure

PDB id

8FZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8FZJ|1|a|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZJ_082 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1787

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8FZJ|1|a|G|462
8FZJ|1|a|U|463
8FZJ|1|a|U|464
8FZJ|1|a|A|465
8FZJ|1|a|A|466
8FZJ|1|a|U|467
8FZJ|1|a|A|468
8FZJ|1|a|C|469
8FZJ|1|a|C|470

Current chains

Chain a

16S Ribosomal RNA

Nearby chains