HL_8FZJ_101

3D structure

PDB id

8FZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGGGUAG

Length

8 nucleotides

Bulged bases

8FZJ|1|x|G|18, 8FZJ|1|x|G|19, 8FZJ|1|x|U|20

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8FZJ_101 not in the Motif Atlas

Homologous match to HL_3WFS_001

Geometric discrepancy: 0.3573

The information below is about HL_3WFS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FZJ|1|x|C|13
8FZJ|1|x|A|14
8FZJ|1|x|G|15
8FZJ|1|x|G|18
8FZJ|1|x|G|19
8FZJ|1|x|U|20
8FZJ|1|x|A|21
8FZJ|1|x|G|22

Current chains

Chain x

p/E phenylalanyl-tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA