HL_8G29_092

3D structure

PDB id

8G29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G29_092 not in the Motif Atlas

Homologous match to HL_4LFB_022

Geometric discrepancy: 0.1304

The information below is about HL_4LFB_022

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8G29|1|1a|U|1012
8G29|1|1a|G|1013
8G29|1|1a|A|1014
8G29|1|1a|A|1015
8G29|1|1a|A|1016
8G29|1|1a|G|1017

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1n

30S ribosomal protein S14 type Z

Chain 1s

30S ribosomal protein S19