HL_8G29_103

3D structure

PDB id

8G29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CAGGGUAG

Length

8 nucleotides

Bulged bases

8G29|1|1w|G|18, 8G29|1|1w|G|19, 8G29|1|1w|U|20

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G29_103 not in the Motif Atlas

Homologous match to HL_6JXM_001

Geometric discrepancy: 0.1487

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

8G29|1|1w|C|13
8G29|1|1w|A|14
8G29|1|1w|G|15
8G29|1|1w|G|18
8G29|1|1w|G|19
8G29|1|1w|U|20
8G29|1|1w|A|21
8G29|1|1w|G|22

Current chains

Chain 1w

A-site Aminoacylated Phe-tRNAphe

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA