HL_8G29_230

3D structure

PDB id

8G29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

8G29|1|2A|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G29_230 not in the Motif Atlas

Homologous match to HL_9DFE_059

Geometric discrepancy: 0.0939

The information below is about HL_9DFE_059

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

8G29|1|2A|U|2528
8G29|1|2A|G|2529
8G29|1|2A|A|2530
8G29|1|2A|A|2531
8G29|1|2A|G|2532
8G29|1|2A|A|2533
8G29|1|2A|A|2534
8G29|1|2A|G|2535

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6