HL_8G2A_189

3D structure

PDB id

8G2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, peptidyl P-site fMTHSMRC-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G2A_189 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0739

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8G2A|1|2a|C|320
8G2A|1|2a|A|321
8G2A|1|2a|C|322
8G2A|1|2a|U|323
8G2A|1|2a|G|324
8G2A|1|2a|A|325
8G2A|1|2a|G|326
8G2A|1|2a|A|327
8G2A|1|2a|C|328
8G2A|1|2a|A|329
8G2A|1|2a|C|330
8G2A|1|2a|G|331
8G2A|1|2a|G|332
8G2A|1|2a|G|333

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2t

30S ribosomal protein S20