HL_8G2B_026

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGCCCACCAGCC

Length

12 nucleotides

Bulged bases

8G2B|1|1A|C|888, 8G2B|1|1A|C|889

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G2B|1|1A|G|882
8G2B|1|1A|G|883
8G2B|1|1A|C|884
8G2B|1|1A|C|885
8G2B|1|1A|C|886
8G2B|1|1A|A|887
8G2B|1|1A|C|888
8G2B|1|1A|C|889
8G2B|1|1A|A|890
8G2B|1|1A|G|892
8G2B|1|1A|C|893
8G2B|1|1A|C|894

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1m

30S ribosomal protein S13

Chain 1w

Transfer RNA; tRNA