HL_8G2B_029

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

8G2B|1|1A|A|1067, 8G2B|1|1A|G|1068, 8G2B|1|1A|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G2B_029 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.4008

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8G2B|1|1A|C|1064
8G2B|1|1A|U|1065
8G2B|1|1A|U|1066
8G2B|1|1A|A|1067
8G2B|1|1A|G|1068
8G2B|1|1A|A|1069
8G2B|1|1A|A|1070
8G2B|1|1A|G|1071
8G2B|1|1A|C|1072
8G2B|1|1A|A|1073
8G2B|1|1A|G|1074

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains