HL_8G2B_136

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

8G2B|1|2A|A|781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G2B_136 not in the Motif Atlas

Homologous match to HL_4WF9_024

Geometric discrepancy: 0.2033

The information below is about HL_4WF9_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

8G2B|1|2A|U|779
8G2B|1|2A|G|780
8G2B|1|2A|A|781
8G2B|1|2A|A|782
8G2B|1|2A|A|783
8G2B|1|2A|A|784
8G2B|1|2A|G|785

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2