3D structure

PDB id
8G2D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GGAAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8G2D_019 not in the Motif Atlas
Homologous match to HL_7RQB_020
Geometric discrepancy: 0.0674
The information below is about HL_7RQB_020
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_35490.2
Basepair signature
cWW-tSH-F-F
Number of instances in this motif group
299

Unit IDs

8G2D|1|1A|G|629
8G2D|1|1A|G|630
8G2D|1|1A|A|631
8G2D|1|1A|A|632
8G2D|1|1A|A|633
8G2D|1|1A|C|634

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 18
50S ribosomal protein L35
Chain 1P
50S ribosomal protein L15

Coloring options:


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