HL_8G2D_052
3D structure
- PDB id
- 8G2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CUG(OMG)GGCGG
- Length
- 9 nucleotides
- Bulged bases
- 8G2D|1|1A|G|2250
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8G2D_052 not in the Motif Atlas
- Homologous match to HL_7RQB_053
- Geometric discrepancy: 0.0704
- The information below is about HL_7RQB_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8G2D|1|1A|C|2248
8G2D|1|1A|U|2249
8G2D|1|1A|G|2250
8G2D|1|1A|OMG|2251
8G2D|1|1A|G|2252
8G2D|1|1A|G|2253
8G2D|1|1A|C|2254
8G2D|1|1A|G|2255
8G2D|1|1A|G|2256
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1x
- Transfer RNA; tRNA
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