HL_8G2D_105
3D structure
- PDB id
- 8G2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- G(5MU)(PSU)CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8G2D_105 not in the Motif Atlas
- Homologous match to HL_3KFU_006
- Geometric discrepancy: 0.1364
- The information below is about HL_3KFU_006
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
8G2D|1|1w|G|53
8G2D|1|1w|5MU|54
8G2D|1|1w|PSU|55
8G2D|1|1w|C|56
8G2D|1|1w|G|57
8G2D|1|1w|A|58
8G2D|1|1w|U|59
8G2D|1|1w|U|60
8G2D|1|1w|C|61
Current chains
- Chain 1w
- A-site and E-site Deacylated tRNAphe
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1Q
- 50S ribosomal protein L16
Coloring options: