HL_8G2D_109

3D structure

PDB id

8G2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAGGGUAG

Length

8 nucleotides

Bulged bases

8G2D|1|1y|G|18, 8G2D|1|1y|G|19, 8G2D|1|1y|U|20

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G2D_109 not in the Motif Atlas

Homologous match to HL_3WFS_001

Geometric discrepancy: 0.2493

The information below is about HL_3WFS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G2D|1|1y|C|13
8G2D|1|1y|A|14
8G2D|1|1y|G|15
8G2D|1|1y|G|18
8G2D|1|1y|G|19
8G2D|1|1y|U|20
8G2D|1|1y|A|21
8G2D|1|1y|G|22

Current chains

Chain 1y

A-site and E-site Deacylated tRNAphe

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA